The password is mpiblast
Feel free to edit this page by asking more questions, adding new insight, or restructuring what is here.
If you want to contact the admin, email cariaso at yahoo. Password change requests will be denied.
RestrictiveFirewallsAndSourceForge
Even users behind firewalls that block port 2401 can use sourceforge's cvs. Just use the machine cvs-pserver
cvs -d:pserver:anonymous@cvs-pserver.sourceforge.net:80/cvsroot/mpiblast login
CVS password: press Enter
cvs -z3 -d:pserver:anonymous@cvs-pserver.sourceforge.net:80/cvsroot/mpiblast co -P mpiblast
BuildMPIBlastFromSource
Here is the procedure I used to build mpiblast from source
wget http://mpiblast.sf.net/mpiblast-latest.tar.gz
wget ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/ncbi.tar.gz
tar zxvf mpiblast-latest.tar.gz
tar zxvf ncbi.tar.gz
patch -p0 < mpiblast/ncbi_Oct2004_evalue.patch
|for electric fence debugging
|apt-get install electric-fence
|export LD_PRELOAD=libefence.so.0.0
ncbi/make/makedis.csh
apt-get install automake1.9
cd mpiblast
aclocal
autoheader
automake -a
autoconf
./configure --with-ncbi=/full/path/to/ncbi
make
Error due to efence
gcc -pipe -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -g -o blastcl3 -O3 -mcpu=pentium4 -I../include -L../lib -DBLAST_CS_API blastall.c -lnetblast -lncbitool -lnetcli -lncbiobj -lncbi -lm
Electric Fence 2.1 Copyright (C) 1987-1998 Bruce Perens.
Electric Fence 2.1 Copyright (C) 1987-1998 Bruce Perens.
Electric Fence 2.1 Copyright (C) 1987-1998 Bruce Perens.
{standard input}: Assembler messages:
{standard input}:0: Warning: end of file not at end of a line; newline inserted
{standard input}:173: Error: unknown pseudo-op: `.lon'
gcc: Internal error: Segmentation fault (program cc1)
Please submit a full bug report.
See for instructions.
For Debian GNU/Linux specific bug reporting instructions,
see .
make: *** blastcl3 Error 1
FAILURE primary make status = 0, demo = 0, threaded_demo = 0, net = 2
Electric Fence 2.1 Copyright (C) 1987-1998 Bruce Perens.
#######
- ##### ##### #### #####
- # # # # # # # #
- # # # # # # # #
- ##### ##### # # #####
- # # # # # # # #
- # # # # #### # #
Comments (0)
You don't have permission to comment on this page.