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Saved by PBworks
on August 9, 2005 at 9:43:22 pm
 

The password is mpiblast

 

Feel free to edit this page by asking more questions, adding new insight, or restructuring what is here.

If you want to contact the admin, email cariaso at yahoo. Password change requests will be denied.

 

 

restrictive firewalls

Even users behind firewalls that block port 2401 can use sourceforge's cvs. Just use the machine cvs-pserver

 

cvs -d:pserver:anonymous@cvs-pserver.sourceforge.net:80/cvsroot/mpiblast login

CVS password: press Enter

cvs -z3 -d:pserver:anonymous@cvs-pserver.sourceforge.net:80/cvsroot/mpiblast co -P mpiblast

 

 

 

Building from source

Here is the procedure I used to build mpiblast from source

 

 

wget http://mpiblast.sf.net/mpiblast-latest.tar.gz

wget ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/ncbi.tar.gz

 

 

tar zxvf mpiblast-latest.tar.gz

tar zxvf ncbi.tar.gz

patch -p0 < mpiblast/ncbi_Oct2004_evalue.patch

 

 

 

|for electric fence debugging

|apt-get install electric-fence

|export LD_PRELOAD=libefence.so.0.0

 

ncbi/make/makedis.csh

 

apt-get install automake1.9

cd mpiblast

aclocal

autoheader

automake -a

autoconf

 

./configure --with-ncbi=/full/path/to/ncbi

make

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