BuildMPIBlastFromSource

Here is the procedure I used to build mpiblast from source

 

mpiblast.org instructions

 

Get mpiblast (pick one of these):

• wget http://mpiblast.sf.net/mpiblast-latest.tar.gz
• cvs -d :pserver:anonymous@mpiblast.org:/home/cvs/mpiblast checkout mpiblast
• cvs checkout using RestrictiveFirewallsAndSourceForge

 

Get ncbi tollbox (pick one)

• wget ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/old/
• wget ftp://ftp.ncbi.nih.gov/toolbox/ncbi_tools/ncbi.tar.gz
• wget ftp://ftp.ncbi.nlm.nih.gov/toolbox/ncbi_tools++/2007/Mar_12_2007/NCBI_C_Toolkit/ncbi_c--Mar_12_2007.tar.gz

 

either

*apt-get install automake1.9

*yum install automake

 

 

tar zxvf mpiblast-latest.tar.gz

tar zxvf ncbi.tar.gz

 

One of

• patch -p0 < mpiblast/ncbi_May2006_evalue.patch
• patch -p0 < mpiblast/ncbi_Mar2007_evalue.patch

 

 

ncbi/make/makedis.csh

 

cd mpiblast

aclocal

autoheader

automake -a

autoconf

 

wget http://cvs.savannah.gnu.org/viewvc/*checkout*/config/config/config.sub

wget http://cvs.savannah.gnu.org/viewvc/*checkout*/config/config/config.guess

 

 

./configure --with-ncbi=/full/path/to/ncbi

make